Utility programs

Name	Description
compose_vector_fields	Compose two vector fields
compute_distance	Compute the distance between a point cloud and a mesh
cxt_to_mha	Render a CXT file into a binary MHA
dice_stats	Compute Dice coefficient for 2 or more volumes
dicom_to_mha	Converter
dicom_uid	Make a new, unique dicom UID
drr	Generate DRR from image volume
fdk	Perform FDK cone-beam reconstruction
mask_mha	Mask out a portion of an image
merge2	Compose affine and vector field (obsolete?)
merge_vfs	Combine two vector fields (e.g. moving and non moving)
mha_to_raw	Converter
mha_to_rtog_dose	Converter
mha_to_vox	Converter
patient_mask	Generate binary mask for patient boundary
plastimatch	Main registration program
point_path	Fast point trajectory solver
raw_to_mha	Slap an MHA header onto a RAW file
resample_mha	Crop, resize, or resample 3D image or vector field
rtog_to_mha	Converter
shuffle_mha	Reshuffle (x,y,z) axes in certain ways
tps_interp	Make a VF from a set of landmark correspondences
tps_update	Modify registration with thin-plate spline
union_mask	Combine masks with union operation
vf_compare	Compare two vector fields
vf_stats	Print statistics of a vector field
vf3d_to_mha	Converter
vox_to_mha	Converter
xf_to_xf	Converter, can convert XF to VF, or XF to XF

The following driver programs are available. They are used for development.

Name	Description
bspline	Run native B-spline registration
demons	Run native demons registration